PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016515734.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 225aa    MW: 26188 Da    PI: 9.4567
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016515734.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.71.5e-16130219198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+k +++s+v+   +l lp +f+++h  k  ++  +tl de+  ++e k+   k++    l++GW++F+ +++L +gD +vF+l+++++f  +v 
  XP_016515734.1 130 FVKPMLQSHVTGGFWLGLPVHFCNTHLPK--RDEFVTLIDENEDEFETKYLALKRG----LSGGWRGFAIDHELVDGDALVFQLIESTKF--KVY 216
                     89*********************999423..4457***************666665....9***********************987777..888 PP

                     EE- CS
              B3  96 vfr 98 
                     ++r
  XP_016515734.1 217 IIR 219
                     877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-20121220IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-24123221IPR015300DNA-binding pseudobarrel domain
CDDcd100172.33E-25128219No hitNo description
PROSITE profilePS5086311.716130221IPR003340B3 DNA binding domain
PfamPF023623.3E-14130219IPR003340B3 DNA binding domain
SMARTSM010194.4E-21130221IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MVESKKKMLA YEESRLKRLE ENKKRMEELN LSKLVQAVRT ATSPKPSPMK KVKPRVRQEV  60
DRSAVRRSNR VADKPPPNYK EVPIEPLGKP RSYKRRDLLN RVYADDEDRQ YAIERAEQLQ  120
SEIDADFPSF VKPMLQSHVT GGFWLGLPVH FCNTHLPKRD EFVTLIDENE DEFETKYLAL  180
KRGLSGGWRG FAIDHELVDG DALVFQLIES TKFKVYIIRV NQAED
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754402e-49HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009612757.11e-166PREDICTED: B3 domain-containing protein At3g19184-like
RefseqXP_016515734.11e-166PREDICTED: B3 domain-containing protein At3g19184-like
SwissprotQ1G3M37e-89Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBLA0A0V0HLY91e-139A0A0V0HLY9_SOLCH; Putative B3 domain-containing protein-like
STRINGPGSC0003DMT4000663231e-138(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16282371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.17e-86B3 family protein